PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022315P3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7863.31 Da    PI: 9.1785
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022315P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.8e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ie+  nr+vtf+kRr g+lKKA ELSvLCd+ev +i+f ++g+lye++s
  MELO3C022315P3  9 KLIEDRCNRHVTFCKRRSGLLKKARELSVLCDVEVGIILFTNRGRLYEFCS 59
                    569**********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-26163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.324161IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-31160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGRKKIEVKL IEDRCNRHVT FCKRRSGLLK KARELSVLCD VEVGIILFTN RGRLYEFCSG  60
NSECLLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-18166166Myocyte-specific enhancer factor 2B
1tqe_Q3e-18166166Myocyte-specific enhancer factor 2B
1tqe_R3e-18166166Myocyte-specific enhancer factor 2B
1tqe_S3e-18166166Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819257e-99LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132657e-99LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459847.13e-38PREDICTED: MADS-box transcription factor 8-like
SwissprotP293838e-26AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A0K2QQ272e-25A0A0K2QQ27_9GENT; MADS box protein
TrEMBLQ689E42e-25Q689E4_GENTR; MADS box transcription factor
STRINGVIT_01s0011g00110.t014e-24(Vitis vinifera)
STRINGORGLA09G0121900.13e-24(Oryza glaberrima)
STRINGGRMZM2G129034_P014e-24(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.15e-27MIKC_MADS family protein